neurosnap

• neurosnap package
  • Submodules
  • neurosnap.api module
    • NeurosnapAPI
      • NeurosnapAPI.BASE_URL
      • NeurosnapAPI.delete_job_share()
      • NeurosnapAPI.get_job_file()
      • NeurosnapAPI.get_job_files()
      • NeurosnapAPI.get_job_status()
      • NeurosnapAPI.get_jobs()
      • NeurosnapAPI.get_services()
      • NeurosnapAPI.get_team_info()
      • NeurosnapAPI.get_team_jobs()
      • NeurosnapAPI.set_job_note()
      • NeurosnapAPI.set_job_share()
      • NeurosnapAPI.submit_job()
  • neurosnap.chemicals module
    • fetch_ccd()
    • get_ccds()
    • sdf_to_smiles()
    • smiles_to_sdf()
    • validate_smiles()
  • neurosnap.conformers module
    • find_LCS()
    • generate()
    • minimize()
  • neurosnap.log module
    • CustomLogger
      • CustomLogger.format()
      • CustomLogger.log_format_basic
      • CustomLogger.log_format_detailed
    • c
      • c.b
      • c.br
      • c.c
      • c.g
      • c.grey
      • c.o
      • c.p
      • c.r
      • c.y
  • neurosnap.msa module
    • align_mafft()
    • get_seqid()
    • pad_seqs()
    • read_msa()
    • run_mmseqs2()
    • run_mmseqs2_modes()
    • run_phmmer()
    • run_phmmer_mafft()
    • write_msa()
  • neurosnap.protein module
    • Protein
      • Protein.__call__()
      • Protein.__init__()
      • Protein.__sub__()
      • Protein.align()
      • Protein.calculate_center_of_mass()
      • Protein.calculate_distance_matrix()
      • Protein.calculate_hydrogen_bonds()
      • Protein.calculate_protein_volume()
      • Protein.calculate_rmsd()
      • Protein.calculate_surface_area()
      • Protein.chains()
      • Protein.distances_from_com()
      • Protein.find_disulfide_bonds()
      • Protein.find_hydrophobic_residues()
      • Protein.find_missing_residues()
      • Protein.find_salt_bridges()
      • Protein.generate_df()
      • Protein.get_aas()
      • Protein.get_backbone()
      • Protein.models()
      • Protein.remove()
      • Protein.remove_non_biopolymers()
      • Protein.remove_nucleotides()
      • Protein.remove_waters()
      • Protein.renumber()
      • Protein.save()
      • Protein.select_residues()
      • Protein.to_sdf()
    • animate_pseudo_3D()
    • calc_lDDT()
    • extract_non_biopolymers()
    • foldseek_search()
    • getAA()
    • plot_pseudo_3D()
    • run_blast()
  • Module contents